Christina Theodoris

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New activity in ctheodoris/Geneformer about 14 hours ago

Ensembl gene ID version used in Geneformer (ENSG)

1

#575 opened about 23 hours ago by

jenny143

New activity in ctheodoris/Geneformer 3 days ago

use geneformer for mouse data

2

#574 opened 3 days ago by

jenny143

New activity in ctheodoris/Geneformer 18 days ago

Clarification on label mapping for cardiomyopathy classifier (nf, dcm, hcm)

1

#571 opened 30 days ago by

ro2h5

New activity in ctheodoris/Genecorpus-30M 18 days ago

median computation

1

#26 opened 11 months ago by

shakeel604

New activity in ctheodoris/Geneformer 18 days ago

problem with get_train_sampler()

1

#572 opened 25 days ago by

scsrsao

problem when running gene_classification.ipynb

2

#573 opened 22 days ago by

jenny143

New activity in ctheodoris/Geneformer about 1 month ago

Genecorpus-95M availability

3

#526 opened 8 months ago by

ZhexuanLiu

Clarification on tuning "frozen layers" hyperparameter with RayTune

1

#570 opened about 1 month ago by

ro2h5

TypeError in classifier.py

1

#568 opened about 2 months ago by

ro2h5

Fix TypeError in make_perturbation_batch_special

1

#567 opened about 2 months ago by

so298

New activity in ctheodoris/Geneformer about 2 months ago

Embedding bulk RNA-seq

1

#569 opened about 2 months ago by

lorenzocampini

New activity in ctheodoris/Geneformer 2 months ago

Finetuning vs Pretraining Speed

2

#566 opened 2 months ago by

yqsu95

New activity in ctheodoris/Geneformer 3 months ago

Bug in tokenizer.py: tokenize_loom

1

#565 opened 3 months ago by

yqsu95

Setting max_ncells=None in EmbExtractor causes TypeError

1

#564 opened 3 months ago by

ro2h5

New activity in ctheodoris/Geneformer 4 months ago

tokenizer zarr integration

1

#561 opened 4 months ago by

jo-mengr

Fine tuning questions

6

#462 opened about 1 year ago by

ZYSK-huggingface

Guidance on speeding up Geneformer ISP on CPU

1

#563 opened 4 months ago by

bogdantanasa

Add fix for new datasets version to make_perturbation_batch_special

1

#562 opened 4 months ago by

tusharagashe

quantization of classifier with insilico perturbation

1

#550 opened 6 months ago by

ZYSK-huggingface

pull_geneformer

1

#557 opened 5 months ago by

spartanzhao