KEEP_FILES.md

Files to Keep - System Functionality

Core System Files (Keep)

Main Application

• app.py - Main Gradio application
• main.py - Entry point
• orchestrator_engine.py - Main orchestration
• context_manager.py - Context management
• llm_router.py - LLM routing
• models_config.py - Model configuration
• config.py - System configuration

Source Code (src/)

• src/ directory (all files)
  • src/agents/ - All agent implementations
  • src/database.py - Database management
  • src/event_handlers.py - Event handling

Supporting Files

• requirements.txt - Python dependencies
• README.md - Main documentation
• install.sh - Installation script
• quick_test.sh - Quick test script
• database_schema.sql - Database schema

Documentation Files (Keep ONLY Essential)

Essential Documentation

• README.md - Main project documentation
• SYSTEM_FUNCTIONALITY_REVIEW.md - Current system status
• SESSION_UI_FIX_COMPLETE.md - UI fixes documentation

Archive (Move to archive/docs/)

• CONTEXT_MEMORY_FIX.md
• CONTEXT_SUMMARIZATION_ENHANCED.md
• CONTEXT_SUMMARIZATION_IMPLEMENTED.md
• CONTEXT_WINDOW_INCREASED.md
• SESSION_CONTEXT_FIX.md
• SESSION_CONTEXT_FIX_SUMMARY.md
• All other *.md files in root and Research_AI_Assistant

Research_AI_Assistant (Archive Entire Directory)

All files in Research_AI_Assistant/ are duplicates and should be archived.

Test Files (Move to archive/test/)

• acceptance_testing.py
• test_setup.py
• verify_no_downgrade.py
• agent_protocols.py
• agent_stubs.py
• cache_implementation.py
• faiss_manager.py
• intent_protocols.py
• intent_recognition.py
• mobile_components.py
• mobile_events.py
• mobile_handlers.py
• performance_optimizations.py
• pwa_features.py

Files to Archive

Documentation (Keep only 3 essential docs)

Archive all markdown files except:

• README.md
• SYSTEM_FUNCTIONALITY_REVIEW.md
• SESSION_UI_FIX_COMPLETE.md

Research_AI_Assistant (Full duplicate)

• Entire Research_AI_Assistant/ directory

Test/Development Files

• All *_test.py, agent_stubs.py, protocol files
• Mobile-specific files (not using mobile UI currently)
• Optimization/performance files (optional enhancements)

Summary

Keep: Core system files + 3 essential docs
Archive: 40+ documentation files + Research_AI_Assistant directory + test files